Factor Analysis for Biclustering with Sparse Factors and Loadings


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Documentation for package ‘fabia’ version 0.1.1

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Breast_A Subclasses of van't Veer breast cancer microarray data set
CBreast Subclasses of van't Veer breast cancer microarray data set
CDLBCL Microarray data set of Rosenwald diffuse large-B-cell lymphoma
CMulti Microarray data set of Su on different mammalian tissue types
DLBCL_B Microarray data set of Rosenwald diffuse large-B-cell lymphoma
extract_bic Extraction of Biclusters
extract_plot Extraction of Biclusters and Plotting of the Results
fabi Factor Analysis for Bicluster Acquisition: Laplace Prior (FABI)
fabia Factor Analysis for Bicluster Acquisition: Laplace Prior (FABIA)
fabiaDemo Demos for fabia
fabiap Factor Analysis for Bicluster Acquisition: Post-Projection (FABIAP)
fabias Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIAS)
fabiasp Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIASP)
fabiaVersion Display version info for package and for FABIA
make_fabi_data Generation of Bicluster Data
make_fabi_data_blocks Generation of Bicluster Data with Bicluster Blocks
make_fabi_data_blocks_pos Generation of Bicluster Data with Bicluster Blocks
make_fabi_data_pos Generation of Bicluster Data
mfsc Sparse Matrix Factorization for Bicluster Analysis (MFSC)
Multi_A Microarray data set of Su on different mammalian tissue types
myImagePlot Plotting of a Matrix
nmfdiv Non-negative Matrix Factorization: Kullaback-Leibler Divergence
nmfeu Non-negative Matrix Factorization: Euclidean Distance
nmfsc Non-negative Sparse Matrix Factorization
nprojfunc Projection of a Vector to a Non-negative Sparse Vector
PlotBicluster Plotting of a bicluster
projfunc Projection of a Vector to a Sparse Vector
XBreast Subclasses of van't Veer breast cancer microarray data set
XDLBCL Microarray data set of Rosenwald diffuse large-B-cell lymphoma
XMulti Microarray data set of Su on different mammalian tissue types