summary {farms} | R Documentation |
This function determinates the percentage of informative genes of a given instance of of INIcalls-class
which has been summarized by exp.farms
, q.farms
or l.farms
before.
summary(object)
object |
An instance of INIcalls-class . |
exp.farms
, q.farms
,l.farms
,show
,INIcalls
data(affybatch.example) eset <- exp.farms(affybatch.example, bgcorrect.method = "rma", pmcorrect.method = "pmonly", normalize.method = "constant") INIs <- INIcalls(eset) # apply I/NI calls summary(INIs) plotINIs(INIs) # draws a density plot of I/NI-calls I_data <- getI_Eset(INIs) # affybatch containing only informative probe sets NI_data <- getNI_Eset(INIs) # affybatch containing only non-informative probe sets I_probes <- getI_ProbeSets(INIs) # vector containing only informative probe sets names NI_probes <- getNI_ProbeSets(INIs) # vector containing only non-informative probe sets names