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Bioinformatics

Software / Services

Services

PrOCoil - Predicting the Oligomerization of Coiled Coil Proteins (Web Interface)

Finding structural analogs in ChEMBL, Drugbank and the Connectivity Map - Similarity Search with Rchemcpp (Web Interface)

DeepSynergy: Predicting anti-cancer drug synergy with Deep Learning (Web Interface)

Software

DeepSynergy: Predicting anti-cancer drug synergy with Deep Learning

Rectified Factor Networks - C++ implementation for Rectified Factor Networks

PODKAT - An R Package for Association Testing Involving Rare and Private Variants

msa: An R Package for Multiple Sequence Alignment

KeBABS - An R Package for Kernel-Based Analysis of Biological Sequences

hapFabia: Software for identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data

HapRFN: a deep learning method to identify short segments of identity by descent (IBD) characterized by rare variants in large sequencing data

DEXUS: Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions

Rchemcpp: An R package for computing the similarity of molecules

fastseg: A fast segmentation algorithm based on the cyber t-test

panelcn.MOPS: CNV detection in targeted panel sequencing data for diagnostic use

cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate

cn.FARMS: a latent variable model to detect copy number variations in microarray data

FABIA Biclustering Software: Factor Analysis for Bicluster Acquisition (FABIA)

PrOCoil - Predicting the Oligomerization of Coiled Coil Proteins (R package)

APCluster - An R Package for Affinity Propagation Clustering

RoCoCo - An R Package Implementing a Robust Rank Correlation Coefficient and a Corresponding Test

"Factor Analysis for Robust Microarray Summarization" (FARMS) algorithm and I/NI calls

"P-SVM algorithm" (PSVM) a software for support vector classification, regression and feature extraction

FMS: Software for regularizing neural networks with "Flat Minimum Search". Flat Minimum Search Software

RTRL: Software for training recurrent neural networks. Real Time Recurrent Learning Software

LSTM: Software for the state of the art recurrent neural network. Long Short-Term Memory Software

Demo Tools

Machine Learning Demos in Mathematica®