Publications

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Journals | Conferences | Books/Book Chapters | Publications (non-peer-reviewed) | Theses

Journals

Title: APCluster: an R package for affinity propagation clustering
Author(s): Ulrich Bodenhofer, Andreas Kothmeier, Sepp Hochreiter
Published: Bioinformatics, 27(17):2463-2464, July 2011, doi:10.1093/bioinformatics/btr406
Download: PDF
Software: APCluster
 
Title: Complex networks govern coiled coil oligomerization - Predicting and profiling by means of a machine learning approach
Author(s): Carsten C. Mahrenholz, Ingrid Abfalter, Ulrich Bodenhofer, Rudolf Volkmer, Sepp Hochreiter
Published: Mol Cell Proteomics, May 2011, doi: 10.1074/mcp.M110.004994
Download: PDF
 
Title: cn.FARMS: a latent variable model to detect copy number variations in microarray data with a low false discovery rate
Author(s): Djork-Arné Clevert, Andreas Mitterecker, Andreas Mayr, Günter Klambauer, Marianne Tuefferd, An De Bondt, Willem Talloen, Hinrich Göhlmann, Sepp Hochreiter
Published: Nucl. Acids Res., 39(12):e79, 2011, doi:10.1093/nar/GKR197
Download: PDF
Software: cn.farms



Conferences

Title: An analysis pipeline for detecting copy number variations with a low false discovery rate in microarray data
Author(s): Djork-Arné Clevert, Andreas Mitterecker, Andreas Mayr, Günter Klambauer, Marianne Tuefferd, An De Bondt, Willem Talloen, Hinrich Göhlmann, Sepp Hochreiter
Published: 12th International Congress of Human Genetics and the American Society of Human Genetics (ICHG/ASHG 2011), Montreal, Canada, Oct 11-15 2011
Abstract: PDF
 
Title: Accurate detection of copy number variations in next generation sequencing data by a latent variable model
Author(s): Günter Klambauer, Djork-Arné Clevert, Andreas Mayr, Karin Schwarzbauer, Andreas Mitterecker, Sepp Hochreiter
Published: 12th International Congress of Human Genetics and the American Society of Human Genetics (ICHG/ASHG 2011), Montreal, Canada, Oct 11-15 2011
Abstract: PDF
 
Title: Copy number aberrations affecting adhesion genes involved in the development of the cerebellar vermis are associated with autism spectrum disorders
Author(s): Sepp Hochreiter, Djork-Arné Clevert
Published: 12th International Congress of Human Genetics and the American Society of Human Genetics (ICHG/ASHG 2011), Montreal, Canada, Oct 11-15 2011
Abstract: PDF
 
Title: Controlling the false discovery rate at detection of biological aberrations in -omic data
Author(s): Djork-Arné Clevert, Andreas Mayr, Andreas Mitterecker, Günter Klambauer, Sepp Hochreiter
Published: CAMDA 2011, Satellite Meeting of ISMB/ECCB 2011, Vienna, July 15-16, 2011
Abstract: PDF



Books/Book Chapters



Publications (non-peer-reviewed)

Title: cn.MOPS: mixture of Poissons for discovering copy number variations in next generation sequencing data
Author(s): Günter Klambauer, Djork-Arné Clevert, Sepp Hochreiter
Published: Poster at 12th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV 2011), San Francisco, USA, Sep 8-10 2011
Abstract: PDF
 
Title: Copy Number Aberrations Affecting the Developing Cerebellar Vermis are Associated with Autism Spectrum Disorders
Author(s): Sepp Hochreiter, Djork-Arné Clevert
Published: Poster at 12th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV 2011), San Francisco, USA, Sep 8-10 2011
Abstract: PDF
 
Title: A low false discovery rate at detection of copy-number aberrations in microarray data
Author(s): Djork-Arné Clevert, Andreas Mayr, Andreas Mitterecker, Günter Klambauer, Sepp Hochreiter
Published: Poster at 12th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV 2011), San Francisco, USA, Sep 8-10 2011
Abstract: PDF
 
Title: Detecting rare copy number variations (CNVs) with sparse coding
Author(s): Andreas Mitterecker, Djork-Arné Clevert, Andreas Mayr, An De Bondt, Willem Talloen, Hinrich Göhlmann, Sepp Hochreiter
Published: Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011
 
Title: Collaborative action between Spain and Austria to enhance the application of High Performance Computing to High throughput technologies
Author(s): Pau Corral, Noura Chelbat, Antonio Muñoz, Johan Karlsson, Alfredo Martínez, Günter Klambauer, Sepp Hochreiter, Oswaldo Trelles, Ulrich Bodenhofer
Published: Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011
 
Title: Genome-wide chromatin remodeling at G/C-rich long nucleosome-free regions containing SP1 and MAZ binding sites
Author(s): Karin Schwarzbauer , Ulrich Bodenhofer, Sepp Hochreiter
Published: Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011
 
Title: cn.FARMS: a latent variable model to detect copy number variations in microarray data with a low false discovery rate
Author(s): Djork-Arné Clevert, Andreas Mitterecker, Andreas Mayr, Günter Klambauer, Marianne Tuefferd, An De Bondt, Willem Talloen, Hinrich Göhlmann, Sepp Hochreiter
Published: Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011
 
Title: Possible sources of wrongly performing probes: from oligonucleotides arrays to NGS
Author(s): Noura Chelbat, Sepp Hochreiter, Ulrich Bodenhofer
Published: Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011
 
Title: cn.MOPS: Mixture of Poissons for Discovering Copy Number Variations in Next Generation Sequencing Data
Author(s): Günter Klambauer, Sepp Hochreiter, Karin Schwarzbauer, Andreas Mayr, Djork-Arné Clevert
Published: Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011
 
Title: Complex networks govern coiled coil oligomerization - predicting and profiling by means of a machine learning approach
Author(s): Ulrich Bodenhofer, Carsten Mahrenholz, Ingrid Abfalter, Rudolf Volkmer, Sepp Hochreiter
Published: Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011
 
Title: Detection of nonlinear effects in gene expression pathways
Author(s): Andreas Mayr, Djork-Arné Clevert, Sepp Hochreiter
Published: Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011
 
Title: FABIA: Factor Analysis for Bicluster Acquisition
Author(s): Djork-Arné Clevert, Ulrich Bodenhofer, Martin Heusel, Andreas Mayr, Andreas Mitterecker, Adetayo Kasim, Tatsiana Khamiakova, Suzy Van Sanden, Dan Lin, Willem Talloen, Luc Bijnens, Hinrich Göhlmann, Ziv Shkedy, Sepp Hochreiter
Published: Poster at 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 17 - July 19 2011



Theses

Title: Making an R package of the PSVM
Author(s): Alexander Lechner
Published: Master thesis, June 2011
 
Title: Detection of nonlinear effects in gene expression pathways
Author(s): Andreas Mayr
Published: Master thesis, May 2011