Publications

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Journals | Conferences | Books/Book Chapters | Publications (non-peer-reviewed) | Theses

Journals

Title: HapFABIA: Identification of very short segments of identity by descent characterized by rare variants in large sequencing data
Author(s): Sepp Hochreiter
Published: Nucl. Acids Res., 41(22):e202, 2013 doi:10.1093/nar/gkt1013
Download: Full Text
Software: hapFabia
Report: Very Short IBD Sharing between Humans, Neandertals (Neanderthals), and Denisovans
 
Title: DEXUS: Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions
Author(s): Günter Klambauer, Thomas Unterthiner, Sepp Hochreiter
Published: Nucl. Acids Res., 41(21):e198, 2013 doi:10.1093/nar/gkt834
Download: Full Text
Software: DEXUS
 
Title: Increasing the discovery power of -omics studies
Author(s): Djork-Arné Clevert, Andreas Mayr, Andreas Mitterecker, Günter Klambauer, Armand Valsesia, Karl Forner, Marianne Tuefferd, Willem Talloen, Jérôme Wojcik, Hinrich Göhlmann, Sepp Hochreiter
Published: Systems Biomedicine, 1:2, Special Issue: Proceedings of the Conferences for the Critical Assessment of Massive Data Analysis (CAMDA): 2011 and 2012, 2013 doi:10.4161/sysb.25774
Download: Abstract/Full Text
 
Title: Testing noisy numerical data for monotonic association
Author(s): Ulrich Bodenhofer, Martin Krone, Frank Klawonn
Published: Inform. Sci., 245:2137, 2013 doi:10.1016/j.ins.2012.11.026
Software: RoCoCo



Conferences

Title: HapFABIA: Identification of very short segments of identity by descent (IBD) via biclustering
Author(s): Sepp Hochreiter, Gundula Povysil
Published: Talk at Annual Meeting of the American Society of Human Genetics (ASHG 2013), Boston, USA, October 22-26, 2013
Abstract: PDF
 
Title: Detecting Differentially Expressed Genes in RNA-Seq Data with Unknown Conditions
Author(s): Günter Klambauer, Thomas Unterthiner, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2013), Boston, USA, October 22-26, 2013
Abstract: PDF
 
Title: PODKAT: a non-burden test for associating complex traits with rare and private variants
Author(s): Ulrich Bodenhofer, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2013), Boston, USA, October 22-26, 2013
Abstract: PDF
 
Title: IBD Mapping of Autism Microarray Data
Author(s): Gundula Povysil, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2013), Boston, USA, October 22-26, 2013
Abstract: PDF



Books/Book Chapters



Publications (non-peer-reviewed)

Title: Computational Methods Aiding Early-Stage Drug Design (Dagstuhl Seminar 13212)
Author(s): Andreas Bender, Hinrich Göhlmann, Sepp Hochreiter, Ziv Shkedy
Published: Dagstuhl Reports, 3(5):78-94, 2013, doi:10.4230/DagRep.3.5.78 (Seminar Homepage)
Download: PDF
 
Title: Detecting rare copy number variations (CNVs) with sparse coding
Author(s): Andreas Mitterecker, Djork-Arné Clevert, Andreas Mayr, Willem Talloen, Hinrich W.H. Göhlmann, Sepp Hochreiter
Published: Poster at 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Berlin, Germany, July 21 - July 23 2013
 
Title: Protein target prediction with Logistic regression in a large scale setting
Author(s): Andreas Mayr, Andreas Mitterecker, Günter Klambauer, Martin Heusel, Aakash Chavan Ravindranath, Andreas Bender, Jörg K. Wegner, Sepp Hochreiter
Published: Poster at 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Berlin, Germany, July 21 - July 23 2013
 
Title: Bicluster analysis in drug discovery
Author(s): Martin Heusel, Djork-Arné Clevert, Günter Klambauer, Andreas Mayr, Andreas Mitterecker, Ulrich Bodenhofer, Sepp Hochreiter
Published: Poster at 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Berlin, Germany, July 21 - July 23 2013
 
Title: Platform specific performance characteristics in view of ERCC spike-ins
Author(s): Pawel P. Labaj, David Kreil, Nancy Stralis-Pavese, Djork-Arné Clevert, Mario Fasold, Hans Binder, Sepp Hochreiter
Published: Poster at 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Berlin, Germany, July 21 - July 23 2013



Theses

Title: IBD Mapping of Autism Microarray Data - Beyond Linkage and Association Mapping
Author(s): Gundula Povysil
Published: Master thesis, Jan 2013