| Title: |
Assessing Technical Performance in Differential Gene Expression Experiments with External Spike-in RNA Control Ratio Mixtures |
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| Author(s): |
Sarah A. Munro, Steven P. Lund, P. Scott Pine, Hans Binder, Djork-Arné Clevert, Ana Conesa, Joaquin Dopazo, Mario Fasold, Sepp Hochreiter, Huixiao Hong, Nedereh Jafari, David P. Kreil, Pawel P. Labaj, Sheng Li, Yang Liao, Simon M. Lin, Joseph Meehan, Christopher E. Mason, Javier Santoyo-Lopez, Robert A. Setterquist, Leming Shi, Wei Shi, Gordon K. Smyth, Nancy Stralis-Pavese, Zhenqiang Su, Weida Tong, Charles Wang, Jian Wang, Joshua Xu, Zhan Ye, Yong Yang, Ying Yu, Marc Salit |
| Published: |
Nature Communications 5, Article number: 5125, 25 September 2014 doi:10.1038/ncomms6125 |
| Download: |
Draft Version arXiv
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| Title: |
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium |
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| Author(s): |
SEQC/MAQC-III Consortium |
| Published: |
Nature Biotechnology, 32:903–914, 2014 doi:10.1038/nbt.2957 |
| Download: |
Full Text
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| Title: |
Furby: fuzzy force-directed bicluster visualization |
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| Author(s): |
Marc Streit, Samuel Gratzl, Michael Gillhofer, Andreas Mayr, Andreas Mitterecker, Sepp Hochreiter |
| Published: |
BMC Bioinformatics, 15(Suppl 6):S4, 2014 doi:10.1186/1471-2105-15-S6-S4 |
| Download: |
Abstract
Full Text
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| Title: |
Lck Mediates Signal Transmission from CD59 to the 1 TCR/CD3 Pathway in Jurkat T Cells |
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| Author(s): |
Anna-M. Lipp, Kata Juhasz, Christian Paar, Christoph Ogris, Paul Eckerstorfer, Roland Thuenauer, Jan Hesse, Benedikt Nimmervoll, Hannes Stockinger, Gerhard J. Schütz, Ulrich Bodenhofer, Zsolt Balogi, Alois Sonnleitner |
| Published: |
PLoS ONE, 9(1):e85934, 2014 doi:10.1371/journal.pone.0085934 |
| Abstract: |
PDF |
| Title: |
Multi-Task Deep Networks for Drug Target Prediction |
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| Author(s): |
Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Marvin Steijaert, Hugo Ceulemans, Jörg Wegner, Sepp Hochreiter |
| Published: |
Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Transfer and Multi-task Learning, Montreal, Canada, December 8-13, 2014 |
| Downdload: |
PDF
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| Title: |
Deep Learning for Drug Target Prediction |
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| Author(s): |
Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Marvin Steijaert, Hugo Ceulemans, Jörg Wegner, Sepp Hochreiter |
| Published: |
Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Representation and Learning Methods for Complex Outputs, Montreal, Canada, December 8-13, 2014 |
| Downdload: |
PDF
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| Title: |
Aiding Drug Design with Deep Neural Networks |
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| Author(s): |
Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Marvin Steijaert, Jörg Wegner, Hugo Ceulemans, Sepp Hochreiter |
| Published: |
Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Machine Learning in Computational Biology, Montreal, Canada, December 8-13, 2014 |
| Downdload: |
PDF
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| Title: |
Deep Learning as an Opportunity in Virtual Screening |
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| Author(s): |
Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Marvin Steijaert, Jörg Wegner, Hugo Ceulemans, Sepp Hochreiter |
| Published: |
Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Machine Learning for Clinical Data Analysis, Healthcare and Genomics, Montreal, Canada, December 8-13, 2014 |
| Downdload: |
PDF
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| Title: |
Rectified Factor Networks and Dropout |
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| Author(s): |
Djork-Arné Clevert, Thomas Unterthiner, Sepp Hochreiter |
| Published: |
Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Deep Learning and Representation Learning, Montreal, Canada, December 8-13, 2014 |
| Downdload: |
PDF
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| Title: |
Deep Learning as an Opportunity in Virtual Screening |
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| Author(s): |
Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Marvin Steijaert, Jörg Wegner, Hugo Ceulemans, Sepp Hochreiter |
| Published: |
Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Deep Learning and Representation Learning, Montreal, Canada, December 8-13, 2014 |
| Downdload: |
PDF
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| Title: |
Utilizing Private Variants in Large Genome-Wide Association Studies: Issues, Techniques, Experiences |
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| Author(s): |
Ulrich Bodenhofer, Sepp Hochreiter |
| Published: |
Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2014), San Diego, USA, October 18-22, 2014 |
| Abstract: |
PDF
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| Title: |
Detection of Copy Number Variations in Cancer Genomes from High Throughput Sequencing Data |
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| Author(s): |
Günter Klambauer, Sepp Hochreiter |
| Published: |
Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2014), San Diego, USA, October 18-22, 2014 |
| Abstract: |
PDF
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| Title: |
Population specific patterns of novel haplotype groups at the PAH locus |
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| Author(s): |
Gundula Povysil, Stefanie Wieser, Sepp Hochreiter, Johannes Zschocke |
| Published: |
Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2014), San Diego, USA, October 18-22, 2014 |
| Abstract: |
PDF
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| Title: |
Identity by descent between humans, Denisovans, and Neandertals |
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| Author(s): |
Sepp Hochreiter, Gundula Povysil |
| Published: |
Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2014), San Diego, USA, October 18-22, 2014 |
| Abstract: |
PDF
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| Title: |
A Cloud-based GWAS Analysis Pipeline for Clinical Researchers |
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| Author(s): |
Paul Heinzlreiter, James Richard Perkins, Oscar Torreno, Johan Karlsson, Juan Antonio Ranea, Andreas Mitterecker, Miguel Blanca, Oswaldo Trelles |
| Published: |
Proc. of the 4th International Conference on Cloud Computing and Services Science (CLOSER 2014), ISBN 978-989-758-019-2, Barcelona, Spain, pp. 387-394, April 2014, doi:10.5220/0004802103870394 |
| Title: |
FABIA: A Probabilistic Model for Biclustering and its Application to Analyzing Big Data in Drug Design |
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| Author(s): |
Djork-Arné Clevert, Günter Klambauer, Andreas Mayr, Andreas Mitterecker, Sepp Hochreiter |
| Published: |
Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
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| Title: |
Detecting biomarkers on label-free mass spectrometry data using biclustering |
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| Author(s): |
Andreas Mitterecker, Djork-Arné Clevert, Sepp Hochreiter |
| Published: |
Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
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| Title: |
Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions |
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| Author(s): |
Thomas Unterthiner, Günter Klambauer, Sepp Hochreiter |
| Published: |
Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
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| Title: |
DeepSAR: Drug Target Prediction using Deep Learning |
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| Author(s): |
Andreas Mayr, Alexander Pfaffinger, Thomas Unterthiner, Günter Klambauer, Marvin Steijaert, Jörg K. Wegner, Hugo Ceulemans, Sepp Hochreiter |
| Published: |
Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
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| Title: |
Sharing of Very Short IBD Segments between Humans, Neandertals, and Denisovans |
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| Author(s): |
Gundula Povysil, Sepp Hochreiter |
| Published: |
bioRxiv, online April 7, 2014, doi:10.1101/003988 |
